Release Notes

All notable changes to this project are documented in this file. It was automatically generated with the changelog-from-release tool.

v0.6.0 (relax dependency pinning) - 2026-02-10

Maintenance release, which might break workflows as the pinned versions are gone.

What’s Changed

• :wrench: loosen versions by @enryH in #166

• 🚧 update runner images by @enryH in #170

• :art: format with latest black version by @enryH in #172

• :memo: start FAQ section by @enryH in #171

Full Changelog: https://github.com/Multiomics-Analytics-Group/vuegen/compare/v0.5.1…v0.6.0

Changes

v0.5.1 - 2025-09-23

What’s Changed

• 📝 Update readme and small logo by @sayalaruano in #158

• Fix App: Exact Python version and local exec by @enryH in #153

• 📝 Upate CONTRIBUTING.md file and create PR template by @sayalaruano in #163

• 📝 Docs: Create and update CHANGELOG.md using changelog-from-release by @sayalaruano in #164

• 📝 Create makefile to automate docs building process by @sayalaruano in #165

Changes

v0.5.0 - 2025-07-19

Bundled GUI

Release 0.5.0 bundled GUI was built using Python 3.12.10.

conda create -n vuegen_gui pip python=3.12.10 jupyter

What’s Changed

• 📝 Update installation instruction for conda by adding conda-forge channel by @sayalaruano in #122

• 📝 Add apicall and chatbot notebooks by @sayalaruano in #123

• :zap: only build GUI on push to main, releases and manuel triggers by @enryH in #130

• Check that report files are unchanged (for now in streamlit) by @enryH in #132

• 🐛 Make excel df paths relative instead of absolute by @sayalaruano in #134

• :bug: allow to specify output folder - use only relative paths by @enryH in #136

• :construction: start to explore adding subsections to homesection by @enryH in #125

• Style and format codebase by @enryH in #131

• :bug: use dynamic version to display version. by @enryH in #142

• 📝 Update logo and citation by @sayalaruano in #145

• :sparkles: shell script to update the tests by @enryH in #148

• :sparkles: make relative outputs and path work better in streamlit by @enryH in #146

• :sparkles: do not fail silently - fail build by @enryH in #149

• Load home image on the base folder when creating a report from a directory by @sayalaruano in #152

• :bug: update formatting to support again multi-line descriptions by @enryH in #151

Changes

v0.4.1 - 2025-05-22

What’s Changed

• Update GUI installation instructions by @enryH in #118

• Streamlit and quarto relative paths, and fix plots resizing by @sayalaruano in #119

• Use multiple sheets from an excel file in reports by @enryH in #115

Changes

v0.4.0 - 2025-05-06

What’s Changed

• :bug: pass config path to completion message by @enryH in #111

• :sparkles: Shut down button for streamlit app by @enryH in #113

• Split readme docs by @sayalaruano in #114

• Make required folder structure more flexible by @enryH in #108

• Recursive sub-sub-sections components by @enryH in #112

• Ruff checks by @enryH in #117

• Update documentation (minor) by @enryH in #83

Changes

v0.3.3 - 2025-04-16

What’s Changed

• 📝 Docs: change text from logo to path to avoid changes across OS by @sayalaruano in #106

• 🚧 ensure a valid python identifier for report_manger.py streamlit file by @enryH in #105

• 🤖 Api and chatbot components update by @sayalaruano in #107

Changes

v0.3.2 - 2025-04-01

What’s Changed

• 🐛 Fix: change the engine to export tables to images from chrome to matplotlib by @sayalaruano in #104

Changes

v0.3.1 - 2025-03-26

What’s Changed

• Quarto checks and output directory parameters by @sayalaruano in #99

Changes

v0.3.0 - 2025-03-21

What’s Changed

• :bug: Save streamlit rand quarto reports with Posix and change str paths to Path by @enryH in #78

• Non random import order and separation from setup code by @enryH in #92

• Os standalone installers (with a GUI) by @enryH in #73

  • includes updates to logging, output-folder specifications, specifying static export folders, itables fix and Windows Path compatibility

  • first GUI created

• 🐛 Fix: add code to handle plotly plots generated with R by @sayalaruano in #96

• :art: updadte GUI instructions, format document by @enryH in #98

To launch the bundled GUI, you will need to unzip the installer compatible with your system (MacOS with arm64/ apple silicon or x86_64/ intel or Windows x86_64) and run vuegen_gui in the unpacked main folder. Most dependencies are included into the bundle using PyInstaller.

Streamlit works out of the box as a purely Python based package. For html creation you will have to have a Python 3.12 installation with the jupyter package installed as quarto needs to start a kernel for execution. This is also true if you install quarto globally on your machine.

We recommend using miniforge to install Python and the conda package manager:

• conda-forge.org/download/

We continue our example assuming you have installed the miniforge distribution for your machine. now, create a virtual environment:

conda create -n vuegen_gui -c conda-forge python=3.12 jupyter
conda info -e # find environment location

Find the vuegen_gui path for your local user.

On MacOS you need to add a bin to the path:

/Users/user/miniforge3/envs/vuegen_gui/bin

On Windows you can use the path as displayed by conda info -e:

[!NOTE] On Windows a base installation of miniforge with jupyter might work as well as the app can see your entire Path which is not the case on MacOS.

C:\Users\user\miniforge3\envs\vuegen_gui

More information regarding the app and builds can be found in the GUI README.

Changes

v0.2.2 - 2025-02-28

What’s Changed

• No default logger and print message after completion by @sayalaruano in #76

Changes

v0.2.1 - 2025-02-25

What’s Changed

• Add basic example directory and notebook by @sayalaruano in #63

• :art: add basic vuegen demo to docs #64 by @enryH in #65

• Display dataframes in streamlit apps with aggrid by @sayalaruano in #66

• 👷 CI: Add CI steps to create streamlit example branch and deploy EMP … by @sayalaruano in #70

• :art: sort imports, format codebase with black by @enryH in #72

• Fix dfi library issue to export a dataframe as an image by @sayalaruano in #74

Changes

v0.2.0 - 2025-02-05

What’s Changed

• 🐛 build docs - fix errors by @enryH in #49

• :art: publish report to GitHub Pages by @enryH in #51

• Readme and img update by @sayalaruano in #52

• :art: add dynamic versioning of python pkg by @enryH in #50

• :art: visualize example in docs by @enryH in #54

• Update footer img by @sayalaruano in #53

• Update demo noteb by @sayalaruano in #55

Changes

v0.1.0 - 2025-01-30

What’s Changed

• Mk_pkg by @enryH in #30

• Config generator from a directory by @sayalaruano in #33

• :sparkles: basic docs by @enryH in #32

• St autorun argument and updated README by @sayalaruano in #35

• Entrypoint by @enryH in #38

• :zap: only run docs for one python version, save only once by @enryH in #44

• EMP case study as example data by @sayalaruano in #45

• restructure package layout by @enryH in #42

• ➕ Add quarto as default dependency by @enryH in #46

• :art: readthedocs configuration by @enryH in #48

New Contributors

• @enryH made their first contribution in #30

• @sayalaruano made their first contribution in #33

Changes